Modeling Calcium Concentration and Biochemical Reactions

by Avrama Blackwell

Blackwell KT (2005) Modeling Calcium Concentration and Biochemical Reactions. Brains, Minds, and Media 1:bmm224 (urn:nbn:de:0009-3-2245). [Viewable at http://www.brains-minds-media.org/archive/224]

License

Any party may pass on this Work by electronic means and make it available for download under the terms and conditions of the Digital Peer Publishing License. The text of the license may be accessed and retrieved via Internet at
http://www.dipp.nrw.de/lizenzen/dppl/dppl/DPPL_v2_en_06-2004.html

It also contains slide presentations and examples from the Second Latin American School on Computational Neuronscience (LASCON), held in Ribeirao Preto, Brazil in July 2008.

The files included here are:

• chemesis2.1.tar.gz - chemesis Ver. 2.1

  This is a library of biochemical reaction objects for modeling calcium concentration, contributed by K. T. (Avrama) Blackwell These were used in the paper:

  K.T. Blackwell (2000) Evidence for a Distinct Light-Induced Calcium-Dependent Potassium Current in Hermissenda Crassicornis, J. Computational Neuroscience, 9: 149-170.

  The latest version is available from

  http://www.gmu.edu/departments/krasnow/CENlab/chemesis.html

• Blackwell_bmm224_2005.pdf - The tutorial as published in Brains, Minds, and Media
• blackwell-examples.tar.gz - Example scripts to accompany the tutorial
• blackwell-examples-2008.tar.gz - Updated example scripts to accompany the tutorials given at LASCON 2008.
• README_2008 - describes the examples in blackwell-examples-2008.
• Lascon2biochemTutorial.ppt - Slides for LASCON 2008 "Modelling Biochemical Reactions"
• Lascon2calciumTutorial.ppt Slides for LASCON 2008 "Modelling Calcium Concentration"

Last updated on: Mon Jun 15 14:29:50 MDT 2009

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